Manifest.toml

# This file is machine-generated - editing it directly is not advised

[[AbstractTrees]]
git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c"
uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
version = "0.4.4"

[[ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"

[[ArnoldiMethod]]
deps = ["LinearAlgebra", "Random", "StaticArrays"]
git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae"
uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
version = "0.2.0"

[[Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"

[[Automa]]
deps = ["TranscodingStreams"]
git-tree-sha1 = "ef9997b3d5547c48b41c7bd8899e812a917b409d"
uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b"
version = "0.8.4"

[[BBI]]
deps = ["BioCore", "Libz"]
git-tree-sha1 = "1dc447cec8b0e52d307a1bdd398c9dcd4aeba0e2"
uuid = "19670fab-07f0-5a41-99c5-c090d774ee27"
version = "0.2.1"

[[BED]]
deps = ["Automa", "BGZFStreams", "BioGenerics", "ColorTypes", "FixedPointNumbers", "GenomicFeatures", "Indexes", "TranscodingStreams"]
git-tree-sha1 = "d2bdf452eecd746da47a3ef85804f659396e09ef"
uuid = "8e4a8c10-cb6b-11e8-08d2-83478d609d67"
version = "0.3.0"

[[BGZFStreams]]
deps = ["CodecZlib"]
git-tree-sha1 = "3aca54d25f8c30056577aa37ea68184da68df685"
uuid = "28d598bf-9b8f-59f1-b38c-5a06b4a0f5e6"
version = "0.3.2"

[[Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"

[[BigWig]]
deps = ["BBI", "BioCore", "BufferedStreams", "GenomicFeatures", "Libz"]
git-tree-sha1 = "b83f8ab279139bdd68b593bee5862fdb0b855b98"
uuid = "9d649c22-cb6b-11e8-1fa9-f3896fced444"
version = "0.1.0"

[[BioAlignments]]
deps = ["BioGenerics", "BioSequences", "BioSymbols", "IntervalTrees", "LinearAlgebra"]
git-tree-sha1 = "6a0c6a01af5bfdbbcb7679c51026da0fc7304d6e"
uuid = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e"
version = "3.1.0"

[[BioCore]]
deps = ["Automa", "BufferedStreams", "YAML"]
git-tree-sha1 = "476edbf4ef94594fff430a84ca96f86cb2327a71"
uuid = "37cfa864-2cd6-5c12-ad9e-b6597d696c81"
version = "2.0.5"

[[BioFetch]]
deps = ["BioServices", "FASTX", "GenomicAnnotations"]
git-tree-sha1 = "b40f10bde9569c0c900489f89a5882a0a90c2cf4"
uuid = "f8217676-c24a-4825-a874-ba6ce2a4fe08"
version = "0.2.1"

[[BioGenerics]]
deps = ["TranscodingStreams"]
git-tree-sha1 = "0b581906418b93231d391b5dd78831fdc2da0c82"
uuid = "47718e42-2ac5-11e9-14af-e5595289c2ea"
version = "0.1.2"

[[BioSequences]]
deps = ["BioSymbols", "PrecompileTools", "Random", "Twiddle"]
git-tree-sha1 = "6cf406ea0d5bc901eabe55fca609007bce2db026"
uuid = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
version = "3.1.5"

[[BioServices]]
deps = ["Dates", "Gumbo", "HTTP", "JSON", "XMLDict"]
git-tree-sha1 = "d27a44c3d3d6f56742f18b236bfb7c517c586547"
uuid = "a0d4ced5-b29c-5395-b614-ca030a679c4b"
version = "0.4.1"

[[BioStructures]]
deps = ["BioAlignments", "BioCore", "BioGenerics", "BioSequences", "BioSymbols", "CodecZlib", "DataFrames", "Downloads", "Format", "Graphs", "LinearAlgebra", "MMTF", "MetaGraphs", "RecipesBase", "Statistics"]
git-tree-sha1 = "1389fcdf568de584aa1c5f4a019bc582b7d8a842"
uuid = "de9282ab-8554-53be-b2d6-f6c222edabfc"
version = "2.0.0"

[[BioSymbols]]
deps = ["PrecompileTools"]
git-tree-sha1 = "e32a61f028b823a172c75e26865637249bb30dff"
uuid = "3c28c6f8-a34d-59c4-9654-267d177fcfa9"
version = "5.1.3"

[[BitFlags]]
git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d"
uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
version = "0.1.7"

[[BufferedStreams]]
git-tree-sha1 = "4ae47f9a4b1dc19897d3743ff13685925c5202ec"
uuid = "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d"
version = "1.2.1"

[[CSV]]
deps = ["Dates", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode"]
git-tree-sha1 = "b83aa3f513be680454437a0eee21001607e5d983"
uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
version = "0.8.5"

[[Calculus]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad"
uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9"
version = "0.5.1"

[[ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "1.16.0"

[[ChangesOfVariables]]
deps = ["InverseFunctions", "LinearAlgebra", "Test"]
git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f"
uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
version = "0.1.8"

[[CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"]
git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.7.2"

[[Codecs]]
deps = ["Test"]
git-tree-sha1 = "70885e5e038cba1c4c17a84ad6c40756e10a4fb5"
uuid = "19ecbf4d-ef7c-5e4b-b54a-0a0ff23c5aed"
version = "0.5.0"

[[ColorTypes]]
deps = ["FixedPointNumbers", "Random"]
git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4"
uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
version = "0.11.4"

[[Compat]]
deps = ["Dates", "LinearAlgebra", "UUIDs"]
git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "4.9.0"

[[CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"

[[ConcurrentUtilities]]
deps = ["Serialization", "Sockets"]
git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e"
uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
version = "2.2.1"

[[Crayons]]
git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
version = "4.1.1"

[[DataAPI]]
git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.15.0"

[[DataFrames]]
deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
git-tree-sha1 = "d4f69885afa5e6149d0cab3818491565cf41446d"
uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
version = "1.4.4"

[[DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
version = "0.18.15"

[[DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464"
version = "1.0.0"

[[Dates]]
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[DensityInterface]]
deps = ["InverseFunctions", "Test"]
git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b"
uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
version = "0.4.0"

[[Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[Distributions]]
deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "938fe2981db009f531b6332e31c58e9584a2f9bd"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.100"

[[DocStringExtensions]]
deps = ["LibGit2"]
git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.9.3"

[[Downloads]]
deps = ["ArgTools", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"

[[DualNumbers]]
deps = ["Calculus", "NaNMath", "SpecialFunctions"]
git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566"
uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74"
version = "0.6.8"

[[ExceptionUnwrapping]]
deps = ["Test"]
git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96"
uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4"
version = "0.1.9"

[[EzXML]]
deps = ["Printf", "XML2_jll"]
git-tree-sha1 = "0fa3b52a04a4e210aeb1626def9c90df3ae65268"
uuid = "8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615"
version = "1.1.0"

[[FASTX]]
deps = ["Automa", "BioGenerics", "BioSequences", "PrecompileTools", "ScanByte", "StringViews", "TranscodingStreams"]
git-tree-sha1 = "5c4b85ab007cb55d38fc8249ddfab6bf2f48cf06"
uuid = "c2308a5c-f048-11e8-3e8a-31650f418d12"
version = "2.1.2"

[[FileIO]]
deps = ["Pkg", "Requires", "UUIDs"]
git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673"
uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
version = "1.16.1"

[[FillArrays]]
deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
git-tree-sha1 = "f372472e8672b1d993e93dada09e23139b509f9e"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "1.5.0"

[[FixedPointNumbers]]
deps = ["Statistics"]
git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc"
uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"
version = "0.8.4"

[[Format]]
git-tree-sha1 = "03bcdf8ab1a5b9e6455ccb45c30910d282aa09f4"
uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8"
version = "1.3.2"

[[FormatSpecimens]]
deps = ["Pkg"]
git-tree-sha1 = "8635a8446a3425e59bc570eef1f8664fbc74f8a1"
uuid = "3372ea36-2a1a-11e9-3eb7-996970b6ffbd"
version = "1.1.0"

[[Future]]
deps = ["Random"]
uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"

[[GFF3]]
deps = ["Automa", "BGZFStreams", "BioGenerics", "FASTX", "GenomicFeatures", "Indexes", "TranscodingStreams", "URIParser"]
git-tree-sha1 = "ace846d50b5e1c0ea2cbb13032dc11165ebf8383"
uuid = "af1dc308-cb6b-11e8-32f0-31192efa90f6"
version = "0.2.3"

[[GenomicAnnotations]]
deps = ["BioGenerics", "BioSequences", "CodecZlib", "DataFrames", "TranscodingStreams"]
git-tree-sha1 = "f09dabebfce53df2f78dd0e603ae1f45f1b91ef1"
uuid = "4f8a0a0a-376d-5ac0-ab14-e88793df67f0"
version = "0.3.2"

[[GenomicFeatures]]
deps = ["BioGenerics", "DataStructures", "IntervalTrees"]
git-tree-sha1 = "51b0906aab4a9ae1a4095c27994361a582c5ebe1"
uuid = "899a7d2d-5c61-547b-bef9-6698a8d05446"
version = "2.1.0"

[[Graphs]]
deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4"
uuid = "86223c79-3864-5bf0-83f7-82e725a168b6"
version = "1.8.0"

[[Gumbo]]
deps = ["AbstractTrees", "Gumbo_jll", "Libdl"]
git-tree-sha1 = "a1a138dfbf9df5bace489c7a9d5196d6afdfa140"
uuid = "708ec375-b3d6-5a57-a7ce-8257bf98657a"
version = "0.8.2"

[[Gumbo_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "29070dee9df18d9565276d68a596854b1764aa38"
uuid = "528830af-5a63-567c-a44a-034ed33b8444"
version = "0.10.2+0"

[[HTTP]]
deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
git-tree-sha1 = "cb56ccdd481c0dd7f975ad2b3b62d9eda088f7e2"
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
version = "1.9.14"

[[HypergeometricFunctions]]
deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685"
uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
version = "0.3.23"

[[IndexableBitVectors]]
deps = ["Random", "Test"]
git-tree-sha1 = "b7f5e42dc867b8a8654a5f899064632dac05bc82"
uuid = "1cb3b9ac-1ffd-5777-9e6b-a3d42300664d"
version = "1.0.0"

[[Indexes]]
deps = ["BGZFStreams", "BioGenerics", "GenomicFeatures", "TranscodingStreams"]
git-tree-sha1 = "275bce824b40fd2e70358e0a652ba1b34172f240"
uuid = "4ffb77ac-cb80-11e8-1b35-4b78cc642f6d"
version = "0.1.3"

[[Inflate]]
git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428"
uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
version = "0.1.3"

[[InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[IntervalTrees]]
git-tree-sha1 = "dc3b97bb5c9cb7c437f74027309f2c2f09a82aaf"
uuid = "524e6230-43b7-53ae-be76-1e9e4d08d11b"
version = "1.1.0"

[[InverseFunctions]]
deps = ["Test"]
git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46"
uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
version = "0.1.12"

[[InvertedIndices]]
git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
version = "1.3.0"

[[IrrationalConstants]]
git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
version = "0.2.2"

[[IterTools]]
git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5"
uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
version = "1.4.0"

[[IteratorInterfaceExtensions]]
git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"

[[JLD2]]
deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
git-tree-sha1 = "aa6ffef1fd85657f4999030c52eaeec22a279738"
uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
version = "0.4.33"

[[JLLWrappers]]
deps = ["Preferences"]
git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.4.1"

[[JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"]
git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
version = "0.21.4"

[[Kmers]]
deps = ["BioSequences"]
git-tree-sha1 = "d9d7b903c44f348f113659bf89e22d72a26fa048"
uuid = "445028e4-d31f-4f27-89ad-17affd83fc22"
version = "0.1.0"

[[LaTeXStrings]]
git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996"
uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
version = "1.3.0"

[[LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"

[[LibCURL_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"

[[LibGit2]]
deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"

[[LibSSH2_jll]]
deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"

[[Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"

[[Libiconv_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "c7cb1f5d892775ba13767a87c7ada0b980ea0a71"
uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
version = "1.16.1+2"

[[Libz]]
deps = ["BufferedStreams", "Random", "Test"]
git-tree-sha1 = "bf1510e80f1e0dba2297b05b59a3a7c8175a9517"
uuid = "2ec943e9-cfe8-584d-b93d-64dcb6d567b7"
version = "1.0.1"

[[LinearAlgebra]]
deps = ["Libdl"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"

[[LogExpFunctions]]
deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.24"

[[Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[LoggingExtras]]
deps = ["Dates", "Logging"]
git-tree-sha1 = "cedb76b37bc5a6c702ade66be44f831fa23c681e"
uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
version = "1.0.0"

[[MMTF]]
deps = ["CodecZlib", "Downloads", "MsgPack"]
git-tree-sha1 = "2af5e4051f50bd99755b84d8bf3547db073992f3"
uuid = "259c3a9c-12c3-507f-b21f-68ecc40fcda4"
version = "1.0.0"

[[MacroTools]]
deps = ["Markdown", "Random"]
git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.10"

[[Markdown]]
deps = ["Base64"]
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