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PacBio

README.md

👋 to PacBio's GitHub space

Are you looking for great tools to analyze your HiFi data?

How about complete workflows for your HiFi data?

Help pages for tools that are running on our long-read platform?

This list is work in progress, check out our repositories for more greatness!

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  1. pbbioconda pbbioconda Public

    PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

    256 45

  2. ccs ccs Public

    CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

    117 30

  3. pbmm2 pbmm2 Public

    A minimap2 frontend for PacBio native data formats

    Raku 178 29

  4. pb-metagenomics-tools pb-metagenomics-tools Public

    Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

    HTML 181 35

  5. trgt trgt Public

    Tandem repeat genotyping and visualization from PacBio HiFi data

    Rust 110 10

  6. hifihla hifihla Public

    An HLA star-calling tool for PacBio HiFi data types

    20 2

Repositories

Showing 10 of 90 repositories
  • sawfish Public

    Structural variant discovery and genotyping from mapped PacBio HiFi data

    PacificBiosciences/sawfish’s past year of commit activity
    Rust 33 1 1 0 Updated Dec 28, 2024
  • HiFi-16S-workflow Public

    Nextflow pipeline to analyze PacBio HiFi full-length 16S data

    PacificBiosciences/HiFi-16S-workflow’s past year of commit activity
    Nextflow 65 BSD-3-Clause-Clear 17 2 0 Updated Dec 23, 2024
  • wdl-common Public
    PacificBiosciences/wdl-common’s past year of commit activity
    WDL 4 BSD-3-Clause-Clear 6 0 1 Updated Dec 20, 2024
  • HiFi-human-WGS-WDL Public
    PacificBiosciences/HiFi-human-WGS-WDL’s past year of commit activity
    WDL 55 BSD-3-Clause-Clear 31 3 3 Updated Dec 20, 2024
  • wdl-dockerfiles Public
    PacificBiosciences/wdl-dockerfiles’s past year of commit activity
    Python 3 BSD-3-Clause-Clear 1 0 3 Updated Dec 20, 2024
  • pb-metagenomics-tools Public

    Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

    PacificBiosciences/pb-metagenomics-tools’s past year of commit activity
    HTML 181 BSD-3-Clause-Clear 35 0 0 Updated Dec 19, 2024
  • pbfusion Public
    PacificBiosciences/pbfusion’s past year of commit activity
    Python 20 3 2 0 Updated Dec 13, 2024
  • pbmm2 Public

    A minimap2 frontend for PacBio native data formats

    PacificBiosciences/pbmm2’s past year of commit activity
    Raku 178 BSD-3-Clause-Clear 29 2 0 Updated Dec 13, 2024
  • pb-StarPhase Public

    A phase-aware pharmacogenomic diplotyper for PacBio datasets

    PacificBiosciences/pb-StarPhase’s past year of commit activity
    Rust 12 1 0 0 Updated Dec 13, 2024
  • pb-benchmarks Public
    PacificBiosciences/pb-benchmarks’s past year of commit activity
    Python 0 0 0 0 Updated Dec 12, 2024
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