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@BioJulia

BioJulia

Bioinformatics and Computational Biology in Julia

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  1. GenomeGraphs.jl GenomeGraphs.jl Public

    A modern genomics framework for julia

    Julia 69 8

  2. BioSequences.jl BioSequences.jl Public

    Biological sequences for the julia language

    Julia 152 48

  3. Contributing Contributing Public

    Documentation, guidelines, and policy on contributing to all BioJulia repositories

    15 7

  4. BioCore.jl BioCore.jl Public

    Core types and interfaces for BioJulia packages

    Julia 29 11

  5. BioSymbols.jl BioSymbols.jl Public

    Nucleic and amino acid primitive types

    Julia 30 14

  6. GeneticVariation.jl GeneticVariation.jl Public

    Datastructures and algorithms for working with genetic variation

    Julia 40 17

Repositories

Showing 10 of 87 repositories
  • Kmers.jl Public

    Efficient types and methods for K-mer biosequences

    BioJulia/Kmers.jl’s past year of commit activity
    Julia 25 MIT 7 1 2 Updated Dec 24, 2024
  • BioStructures.jl Public

    A Julia package to read, write and manipulate macromolecular structures

    BioJulia/BioStructures.jl’s past year of commit activity
    Julia 95 22 8 0 Updated Dec 23, 2024
  • BioSequences.jl Public

    Biological sequences for the julia language

    BioJulia/BioSequences.jl’s past year of commit activity
    Julia 152 MIT 48 18 (1 issue needs help) 5 Updated Dec 22, 2024
  • BioJulia/GenomicAnnotations.jl’s past year of commit activity
    Julia 16 MIT 4 0 0 Updated Dec 18, 2024
  • XAMAuxData.jl Public

    Read auxiliary data fields in SAM, GFA and PAF formats

    BioJulia/XAMAuxData.jl’s past year of commit activity
    Julia 1 MIT 0 0 1 Updated Dec 13, 2024
  • PairwiseMappingFormat.jl Public

    Parser for the PAF format in bioinformatics

    BioJulia/PairwiseMappingFormat.jl’s past year of commit activity
    Julia 2 MIT 0 0 0 Updated Dec 13, 2024
  • MemoryViews.jl Public

    Simple, low-level views into memory in Julia

    BioJulia/MemoryViews.jl’s past year of commit activity
    Julia 17 MIT 1 0 0 Updated Dec 13, 2024
  • BioMarkovChains.jl Public

    Representing biological sequences as Markov chains

    BioJulia/BioMarkovChains.jl’s past year of commit activity
    Julia 8 MIT 2 0 1 Updated Dec 9, 2024
  • Automa.jl Public

    A julia code generator for regular expressions

    BioJulia/Automa.jl’s past year of commit activity
    Julia 189 16 8 0 Updated Dec 2, 2024
  • PopGen.jl Public

    Population Genetics in Julia

    BioJulia/PopGen.jl’s past year of commit activity
    Julia 50 MIT 16 4 1 Updated Nov 26, 2024