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@histopathology

Histopathology Research

Collection of Repositories related to Histopathology and Image Analysis
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  1. Deeplearning-digital-pathology Deeplearning-digital-pathology Public

    Forked from zhaoxuanma/Deeplearning-digital-pathology

    Full package for applying deep learning to virtual slides.

    Python 1

  2. FQPath FQPath Public

    Forked from mahdihosseini/FQPath

    No-Reference Focus Quality Assessment of Digital Pathology Images [IEEE TMI 2019]

    MATLAB 1

  3. qupath-extension-sam qupath-extension-sam Public

    Forked from ksugar/qupath-extension-sam

    QuPath extension for Segment Anything Model (SAM)

    Java 1

  4. OpenAL OpenAL Public

    Forked from miccaiif/OpenAL

    Official PyTorch Code of our MICCAI2023 paper OpenAL

    1

  5. WSI_histology WSI_histology Public

    Forked from tovaroe/WSI_histology

    MATLAB functionality for working with whole slide images of histological slide scans

    MATLAB 1

  6. wsinfer wsinfer Public

    Forked from SBU-BMI/wsinfer

    🔥🚀 Blazingly fast pipeline for patch-based classification in whole slide images

    Python 1

Repositories

Showing 10 of 375 repositories
  • TITAN Public Forked from mahmoodlab/TITAN

    Multimodal Whole Slide Foundation Model for Pathology

    histopathology/TITAN’s past year of commit activity
    Jupyter Notebook 0 13 0 0 Updated Dec 3, 2024
  • BiomedParse Public Forked from microsoft/BiomedParse

    BiomedParse: A Foundation Model for Joint Segmentation, Detection, and Recognition of Biomedical Objects Across Nine Modalities

    histopathology/BiomedParse’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 31 0 0 Updated Nov 27, 2024
  • dpat_imageanalysisapi_sdk Public Forked from sectra-medical/dpat_imageanalysisapi_sdk

    SDK for Sectra's ImageAnalysis API for Digital Pathology

    histopathology/dpat_imageanalysisapi_sdk’s past year of commit activity
    0 BSD-3-Clause-Clear 3 0 0 Updated Nov 25, 2024
  • qubalab Public Forked from qupath/qubalab

    Lab for quantitative bioimage analysis experiments in Python

    histopathology/qubalab’s past year of commit activity
    Python 0 Apache-2.0 4 0 0 Updated Nov 4, 2024
  • arriba Public Forked from suhrig/arriba

    Fast and accurate gene fusion detection from RNA-Seq data

    histopathology/arriba’s past year of commit activity
    C++ 0 50 0 0 Updated Nov 1, 2024
  • multiview-stitcher Public Forked from multiview-stitcher/multiview-stitcher

    A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.

    histopathology/multiview-stitcher’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 8 0 0 Updated Oct 29, 2024
  • instanseg Public Forked from instanseg/instanseg
    histopathology/instanseg’s past year of commit activity
    Python 0 Apache-2.0 19 0 0 Updated Oct 29, 2024
  • i2k2024 Public Forked from qupath/i2k2024
    histopathology/i2k2024’s past year of commit activity
    Groovy 0 2 0 0 Updated Oct 29, 2024
  • DigiPathoImageAnalysis Public Forked from masih4/DigiPathoImageAnalysis

    List of academic institutes/companies working on computer-based digital pathology image analysis

    histopathology/DigiPathoImageAnalysis’s past year of commit activity
    0 12 0 0 Updated Oct 26, 2024
  • hibou Public Forked from HistAI/hibou

    Hibou: Foundational Models for Pathology

    histopathology/hibou’s past year of commit activity
    Python 0 Apache-2.0 7 0 0 Updated Oct 23, 2024
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