Update bin, lib, template docs

[christopher-hakkaart]

Draft, do not merge.

[netlify]

✅ Deploy Preview for nextflow-docs-staging ready!

Name	Link
🔨 Latest commit	0b9c83f
🔍 Latest deploy log	https://app.netlify.com/sites/nextflow-docs-staging/deploys/67508fe5ee25940008d790f8
😎 Deploy Preview	https://deploy-preview-5564--nextflow-docs-staging.netlify.app
📱 Preview on mobile	Toggle QR Code... Use your smartphone camera to open QR code link.

---

To edit notification comments on pull requests, go to your Netlify site configuration.

[bentsherman]

I'm not entirely sold on this, but let's see where you take it.

In other words, I'm not sure it's worth having an entire page dedicated to project-level bin/lib/templates when we are trying to encourage people to use module directories. And in the long-term, trying to move people away from the lib directory in favor of nextflow scripts and custom plugins.

But if this page can absorb other concepts related to project structure, e.g. from the CLI and sharing pages, it might be worthwhile

[christopher-hakkaart]

Hmmm, yeah, good point.

I'm not completely committed to a whole "Project structure" page, but I think we do need to describe what project-level bin/lib/templates are and how to use them. It might be a good place to mention main.nf and nextflow.config too. Alternatively, I'd be fine with blending this into another page, I'm just not sure which one.

Either way, I'll modify the text to push developers to module-level module and template directories, and away from the lib directory in favor of nextflow scripts and custom plugins.