SciML Open Source Scientific Machine Learning

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180 repositories

Catalyst.jl
Public
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
simulation biology dsl julia systems-biology ode reaction-network differential-equations sde chemical-reactions
Julia
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Other
•78•465•94•17•Updated Dec 28, 2024Dec 28, 2024
RuntimeGeneratedFunctions.jl
Public
Functions generated at runtime without world-age issues or overhead
julia
Julia
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MIT License
•14•100•14•0•Updated Dec 28, 2024Dec 28, 2024
PoissonRandom.jl
Public
Fast Poisson Random Numbers in pure Julia for scientific machine learning (SciML)
high-performance-computing poisson poisson-distribution poisson-processes scientific-machine-learning sciml tau-leaping julia
Julia
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Other
•6•16•1•0•Updated Dec 28, 2024Dec 28, 2024
EllipsisNotation.jl
Public
Julia-based implementation of ellipsis array indexing notation `..`
arrays julia julia-language julialang
Julia
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Other
•14•90•2•0•Updated Dec 28, 2024Dec 28, 2024
GlobalSensitivity.jl
Public
Robust, Fast, and Parallel Global Sensitivity Analysis (GSA) in Julia
ode morris-method ordinary-differential-equations sensitivity-analysis global-sensitivity-analysis gsa sobol-method efast julia julia-language
Julia
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MIT License
•20•51•23•3•Updated Dec 28, 2024Dec 28, 2024
SciMLBenchmarksOutput
Public
SciML-Bench Benchmarks for Scientific Machine Learning (SciML), Physics-Informed Machine Learning (PIML), and Scientific AI Performance
python performance r neural-network gpu julia matlab pytorch benchmarks differential-equations
HTML
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MIT License
•4•18•0•1•Updated Dec 27, 2024Dec 27, 2024
SciMLBenchmarks.jl
Public
Scientific machine learning (SciML) benchmarks, AI for science, and (differential) equation solvers. Covers Julia, Python (PyTorch, Jax), MATLAB, R
python benchmark ai julia matlab pytorch ode partial-differential-equations differential-equations differentialequations
MATLAB
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MIT License
•85•319•35•74•Updated Dec 27, 2024Dec 27, 2024
FindFirstFunctions.jl
Public
Faster `findfirst(==(val), dense_vector)`.
Julia
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MIT License
•3•8•3•0•Updated Dec 27, 2024Dec 27, 2024
CellMLToolkit.jl
Public
CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.
systems-biology physiology cellml julia ode differential-equations scientific-machine-learning sciml
Julia
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Other
•16•61•9•2•Updated Dec 27, 2024Dec 27, 2024
PreallocationTools.jl
Public
Tools for building non-allocating pre-cached functions in Julia, allowing for GC-free usage of automatic differentiation in complex codes
automatic-differentiation garbage-collection high-performance-computing differentiable-programming
Julia
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Other
•14•114•3•0•Updated Dec 27, 2024Dec 27, 2024
SciMLStructures.jl
Public
A structure interface for SciML to give queryable properties from user data and parameters
api interfaces
Julia
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MIT License
•5•8•0•0•Updated Dec 26, 2024Dec 26, 2024
BaseModelica.jl
Public
Importers for the BaseModelica standard into the Julia ModelingToolkit ecosystem
julia ode modelica differential-equations dae sciml symbolic-numeric-computing
Julia
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MIT License
•3•7•4•0•Updated Dec 26, 2024Dec 26, 2024
ParameterizedFunctions.jl
Public
A simple domain-specific language (DSL) for defining differential equations for use in scientific machine learning (SciML) and other applications
parameters jacobian differential-equations scientific-machine-learning sciml
Julia
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Other
•18•76•1•1•Updated Dec 26, 2024Dec 26, 2024
CommonSolve.jl
Public
A common solve function for scientific machine learning (SciML) and beyond
interface composibility scientific-machine-learning sciml
Julia
•8•20•0•0•Updated Dec 26, 2024Dec 26, 2024
SciMLBase.jl
Public
The Base interface of the SciML ecosystem
julia ode dde ordinary-differential-equations differentialequations sde dae scientific-machine-learning sciml
Julia
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MIT License
•104•141•62•31•Updated Dec 25, 2024Dec 25, 2024
DelayDiffEq.jl
Public
Delay differential equation (DDE) solvers in Julia for the SciML scientific machine learning ecosystem. Covers neutral and retarded delay differential equations, and differential-algebraic equations.
julia dde adaptive differentialequations delay-differential-equations solvers stiff ode differential-equations scientific-machine-learning
Julia
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Other
•27•59•19•3•Updated Dec 25, 2024Dec 25, 2024
ModelingToolkit.jl
Public
An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations
computer-algebra optimization symbolic dde ordinary-differential-equations sde pde dae stochastic-differential-equations delay-differential-equations
Julia
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Other
•210•1.4k•313•63•Updated Dec 25, 2024Dec 25, 2024
SurrogatesBase.jl
Public
Basically just a surrogate in disguise
Julia
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MIT License
•3•4•0•0•Updated Dec 24, 2024Dec 24, 2024
SymbolicIndexingInterface.jl
Public
A general interface for symbolic indexing of SciML objects used in conjunction with Domain-Specific Languages
dsl indexing symbolic domain-specific-language symbolic-computation scientific-machine-learning sciml high-level-interfaces acausal-modeling
Julia
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MIT License
•8•15•10•10•Updated Dec 24, 2024Dec 24, 2024
OrdinaryDiffEq.jl
Public
High performance ordinary differential equation (ODE) and differential-algebraic equation (DAE) solvers, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)
high-performance ordinary-differential-equations adaptive differentialequations event-handling hacktoberfest julia ode differential-equations scientific-machine-learning
Julia
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Other
•214•570•304•43•Updated Dec 23, 2024Dec 23, 2024
QuasiMonteCarlo.jl
Public
Lightweight and easy generation of quasi-Monte Carlo sequences with a ton of different methods on one API for easy parameter exploration in scientific machine learning (SciML)
parameter-estimation quasi-monte-carlo physics-informed-learning julia scientific-machine-learning sciml
Julia
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MIT License
•26•104•16•0•Updated Dec 22, 2024Dec 22, 2024
DataInterpolations.jl
Public
A library of data interpolation and smoothing functions
Julia
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MIT License
•46•239•23•4•Updated Dec 22, 2024Dec 22, 2024
ComponentArrays.jl
Public
Arrays with arbitrarily nested named components.
machine-learning simulation optimization julia modeling array controls neural-networks arrays dynamical-systems
Julia
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MIT License
•35•301•68•11•Updated Dec 22, 2024Dec 22, 2024
ReactionNetworkImporters.jl
Public
Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices
biology chemical-kinetics differential-equations chemical-reactions gillespie-algorithm julia
Julia
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MIT License
•9•26•8•0•Updated Dec 22, 2024Dec 22, 2024
BoundaryValueDiffEq.jl
Public
Boundary value problem (BVP) solvers for scientific machine learning (SciML)
gpu bvp neural-ode scientific-machine-learning neural-differential-equations neural-bvp sciml differential-equations differentialequations
Julia
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Other
•36•45•23•9•Updated Dec 22, 2024Dec 22, 2024
StructuralIdentifiability.jl
Public
Fast and automatic structural identifiability software for ODE systems
parameter-estimation differentialequations structural-identifiability julia
Julia
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MIT License
•17•112•9•4•Updated Dec 21, 2024Dec 21, 2024
diffeqpy
Public
Solving differential equations in Python using DifferentialEquations.jl and the SciML Scientific Machine Learning organization
dde ordinary-differential-equations sde dae stochastic-differential-equations scientific-machine-learning sciml ode differential-equations numba
Python
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MIT License
•43•545•10•0•Updated Dec 20, 2024Dec 20, 2024
NeuralOperators.jl
Public
DeepONets, (Fourier) Neural Operators, Physics-Informed Neural Operators, and more in Julia
Julia
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MIT License
•5•15•7•5•Updated Dec 20, 2024Dec 20, 2024
DiffEqParamEstim.jl
Public
Easy scientific machine learning (SciML) parameter estimation with pre-built loss functions
estimation ode dde differential-equations parameter-estimation ordinary-differential-equations differentialequations sde dae stochastic-differential-equations
Julia
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Other
•34•59•16•7•Updated Dec 19, 2024Dec 19, 2024
DiffEqFlux.jl
Public
Pre-built implicit layer architectures with O(1) backprop, GPUs, and stiff+non-stiff DE solvers, demonstrating scientific machine learning (SciML) and physics-informed machine learning methods
neural-networks partial-differential-equations differential-equations ordinary-differential-equations differentialequations stochastic-differential-equations delay-differential-equations pinn neural-ode scientific-machine-learning
Julia
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MIT License
•153•873•37•2•Updated Dec 19, 2024Dec 19, 2024