Open source tools for computational pathology - Nature BME
QuPath - Open-source bioimage analysis for research
A framework for high-performance medical image processing, neural network inference and visualization
Tools for computational pathology
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Library for Digital Pathology Image Processing
Towards a general-purpose foundation model for computational pathology - Nature Medicine
cuCIM - RAPIDS GPU-accelerated image processing library
A vision-language foundation model for computational pathology - Nature Medicine
Digital pathology image viewer with support for human/machine generated annotations and markups.
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Interoperable web-based DICOM slide microscopy viewer and annotation tool
⚡ Open-source software for deep learning-based digital pathology
Stain normalization tools for histological analysis and computational pathology
PAthological QUpath Obsession - QuPath and Python conversations
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep Learning (MIDL) 2020'
TiffSlide - cloud native openslide-python replacement based on tifffile
Encoder-Decoder Cell and Nuclei segmentation models
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
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